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Image Search Results
Journal: PLoS Pathogens
Article Title: Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration
doi: 10.1371/journal.ppat.1005860
Figure Lengend Snippet: eGFP-PLK-expressing constructs alone (left panels) or a combination of eGFP or eGFP-PLK and Gag-mCherry encoding expression constructs (right panels) were transfected into 293T cells, as indicated above each panel of images. Forty-eight hours post-transfection, protein localization patterns were examined in fixed cells by confocal laser scanning microscopy (CLSM). Channels of the individual fluorescence micrographs are indicated on top, and the PLK variant used is indicated on the left. White arrowheads indicate fluorescent PLK foci presumed to be centrosomes. Data are representative of n = 5 independent experiments. (A) Localization patterns of eGFP-tagged PLK proteins (detected in eGFP-PLK channel) in mitotic cells transfected with the corresponding constructs. (B) Localization patterns of eGFP-tagged PLK and mCherry-tagged Gag proteins detected in corresponding channels (Gag variant used labeled either as wt-mCh or T225A-mCh) in mitotic cells. (C) Localization of eGFP and wt Gag-mCherry in mitotic cells. (D) Localization patterns of eGFP-tagged PLK proteins (detected in eGFP-PLK channel) in interphase cells transfected with the corresponding constructs. (E) Localization patterns of eGFP-tagged PLK and mCherry-tagged Gag proteins detected in corresponding channels (Gag variant used labeled either as wt-mCh or T225A-mCh) in interphase cells. Scale bar: 10 μm.
Article Snippet: The human
Techniques: Expressing, Construct, Transfection, Confocal Laser Scanning Microscopy, Fluorescence, Variant Assay, Labeling
Journal: PLoS Pathogens
Article Title: Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration
doi: 10.1371/journal.ppat.1005860
Figure Lengend Snippet: PFV virions were produced by transient transfection of the four-component PFV vector system, containing the pcoPG4 variants denoted above each of the blots, into 293T cells. Viral particles were pelleted from cell-free tissue culture supernatants by ultracentrifugation through 20% sucrose and equal amounts of particle lysates separated by SDS-PAGE were blotted to nitrocellulose membranes. The phosphorylation status of the particle-associated Gag variants was determined by the corresponding antibodies specific for different phosphorylated amino acid motives as indicated. Data are representative of n = 4 independent experiments. (A) Schematic illustration of PFV Gag protein organization with highlighted putative T-P motifs and surrounding amino acids recognized when phosphorylated at the threonine residue by either the α-pT-P (orange letters) or α-Gag S-pT-P (blue letters) phosphopeptide-specific antibody. Solid vertical arrow: primary Gag processing site; dashed vertical arrows: secondary Gag processing sites; (B) Detection of the phosphorylated Thr-Pro (pT-P) motives in PFV Gag wt, iSTP and pmSTP virus particles (α-pT-P antiserum) and comparison with the total Gag content in the particle lysates (α-Gag). (C) Comparison of the pT-P phosphorylation status in the wt and T225A PFV particles in the absence (-) or presence (+) of the Lambda Phosphatase (λP) pretreatment of viral proteins. (D) Comparison of the PFV Gag-associated S-T-P motif phosphorylation status (α-Gag S-pT-P; detected with the corresponding PFV Gag-specific antibody) in virus preparations containing either the wt or the T225A Gag variant in the absence (-) or presence (+) of the λP pretreatment.
Article Snippet: The human
Techniques: Produced, Transfection, Plasmid Preparation, SDS Page, Phospho-proteomics, Residue, Virus, Comparison, Variant Assay
Journal: PLoS Pathogens
Article Title: Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration
doi: 10.1371/journal.ppat.1005860
Figure Lengend Snippet: (A) PFV virions were produced by transient transfection of 293T cells with the four-component PFV vector system, containing either the wt Gag or one of the denoted iSTP- and pmSTP Gag variants. Titers of harvested viruses were determined by flow cytometry analysis of infected HT1080 target cells three days post-infection. The mean values and standard deviation for each supernatant were calculated from samples of cells infected with serial virus dilutions as described in Material and Methods. The values obtained using wt PFV Gag expression plasmids were arbitrarily set to 100%. Relative means and standard deviations normalized for Gag content (except mock) from independent experiments (n = 4–9) are shown. Differences between means of wt virus and the individual mutants were analyzed by Welch’s t test (**, p<0.01). Absolute titers of wt supernatants ranged between 1.2 x 10 6 and 1.2 x 10 7 eGFP ffu/ml. (B) Replication-competent PFV virions were produced by transient transfection of proviral expression vectors, containing either the wt Gag or one of the denoted iSTP- and pmSTP Gag variants into 293T cells. Viruses were harvested two days post-transfection and used to infect HT1080 PLNE target cells. Titers were determined by flow cytometry analysis one day post-infection. The values obtained using wt PFV Gag expression plasmids were arbitrarily set to 100%. Relative means and standard deviations normalized for Gag content (except mock) from independent experiments (n = 3–8) are shown. Differences between means of wt virus and the individual mutants were analyzed by Welch’s t test (**, p<0.01). Absolute titers of wt supernatants ranged between 1.7 x 10 4 and 7 x 10 4 eGFP ffu/ml. (C) Titers of iSTP- and pmSTP mutant PFV particles relative to wt over multiple rounds of target cell infection. Viruses were produced and harvested as described in panel B and Gag content normalized amounts of viral supernatants were used to infect HT1080 PLNE in serial dilutions. At different time points post-infection (as indicated on the x-axis) cells were harvested for flow cytometry analysis to determine viral titers. The values obtained using wt PFV supernatants at each time point were arbitrarily set to 100%. Relative means and standard deviations from two independent experiments are shown.
Article Snippet: The human
Techniques: Produced, Transfection, Plasmid Preparation, Flow Cytometry, Infection, Standard Deviation, Virus, Expressing, Mutagenesis
Journal: PLoS Pathogens
Article Title: Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration
doi: 10.1371/journal.ppat.1005860
Figure Lengend Snippet: Replication-competent PFV virions were produced by transient transfection of proviral expression constructs, containing either the wt Gag (wt) or one of the denoted iSTP- (S224A, T225A, P226A) or pmSTP (T225E) Gag variants into 293T cells. As controls, constructs containing wt Gag in combination with Pol with enzymatically inactive reverse transcriptase (iRT) or inactive integrase (iIN) domain, as well as constructs harboring translationally inactivated ORFs for Gag and Pol (ΔGag/Pol) or Env (ΔEnv) were used. The mock control (mock) included cells transfected with pUC19 alone. (A) Representative Western blot analysis of viral particles (virus) purified from 293T cell culture supernatant by ultracentrifugation through 20% sucrose and 293T cell lysates (cell). PFV proteins were detected using polyclonal antibodies specific for PFV Gag (α-Gag) or PFV Env LP (α-LP), a mixture of hybridoma supernatants specific for PFV Pol PR/RT and IN (α-PR/RT + α-IN), or a commercial monoclonal antibody specific for GAPDH (α-GAPDH). Serial dilutions of the wt samples (wt; lanes 6–9) were quantified to determine their relative protein contents compared to other samples. The identity of the individual proteins detected is indicated on the right. (B) Viral particle release was determined by quantitative Western blot analysis of viral particle lysates. Mean values and standard deviations (n = 3) are shown as relative values compared to the wt control and normalized for cellular expression levels. (C) Quantification of PFV vgRNA in virus producing cells (vgRNA cell) and released particles (vgRNA virus) and particle-associated vgDNA (vgDNA virus). Mean values and standard deviation (n = 3–8) are shown as relative values compared to the wt control. Cellular values were normalized to GAPDH levels, viral particle values were normalized for Gag content.
Article Snippet: The human
Techniques: Produced, Transfection, Expressing, Construct, Reverse Transcription, Control, Western Blot, Virus, Purification, Cell Culture, Standard Deviation
Journal: PLoS Pathogens
Article Title: Interactions of Prototype Foamy Virus Capsids with Host Cell Polo-Like Kinases Are Important for Efficient Viral DNA Integration
doi: 10.1371/journal.ppat.1005860
Figure Lengend Snippet: Replication-deficient PFV supernatants were harvested after transient transfection of the PFV four-component vector system, containing the eGFP-tagged Gag p68 wt (wt) or T225A (T225A) variants in combination with wt (wt) or fusion-incompetent Env (iFuse) into 293T cells. HT1080 cells were synchronously infected with undiluted (undil.) and ten-fold diluted (1:10) PFV supernatants and eGFP MFI values were measured by flow cytometry at indicated time points until 24 h post-transduction. Representative data shown are from one out of three independent experiments.
Article Snippet: The human
Techniques: Transfection, Plasmid Preparation, Infection, Flow Cytometry, Transduction
Journal: Stem cells (Dayton, Ohio)
Article Title: Cnot1, Cnot2, and Cnot3 Maintain Mouse and Human ESC Identity and Inhibit Extraembryonic Differentiation
doi: 10.1002/stem.1070
Figure Lengend Snippet: The Cnot genes maintain self-renewal by repressing early trophectoderm (TE) transcription factors. (A): Cnot1, Cnot2, and Cnot3 knockdown did not immediately affect known self-renewal factors and pathways. Oct4GiP cells were transfected with control-siRNA (Control), Cnot1-siRNA1 (Cnot1-KD), Cnot2-siRNA2 (Cnot2-KD), or Cnot3-siRNA2 (Cnot3-KD) in M15 medium. Cells were collected 48 hours after transfection, and total Stat3, Smad1, b-Catenin as well as phospho-Stat3, phospho-Smad1, phosphor-b-Catenin, Oct4, and Nanog levels were determined by Western blot. Starved: control-transfected ESCs cultured in serum-free and LIF-free medium for additional 4 hours. (B): Comparing gene expression changes caused by perturbations of known self-renewal factors: Cnot1, 2, and 3 silencing induced similar changes to those of Oct4 or Sox2 silencing. Pearson's correlation coefficients were calculated between microarray datasets and depicted in a heatmap. The self-renewal factors were clustered by unsupervised hierarchical clustering based on the correlation coefficients. Microarray datasets used for this plot are listed in Supporting Information Table 2. (C): Cnot2 or Cnot3 overexpression cannot rescue Oct4 or Sox2 silencing-induced differentiation. Oct4GiP cells and Oct4GiP cells overexpressing Cnot2 (Cnot2-Rescue, same as in Fig. 1C) or Cnot3 (Cnot3-Rescue, same as in Fig. 1C) were transfected with control, Oct4 (Oct4-KD), or Sox2 (Sox2-KD) siRNAs, and the % differentiation was determined by the Oct4GiP reporter assay. (D): Cnot1, Cnot2, and Cnot3 knockdown induced TE differentiation in the presence of sustained Oct4 expression. ZHBTc4 cells that constitu-tively express Oct4 at the normal level from a Tet-Off promoter were transfected with control or Cnot1-siRNA1 (Cnot1-KD), Cnot2-siRNA2 (Cnot2-KD), Cnot3-siRNA2 (Cnot3-KD), and the expression of TE markers Cdx2 and Gata3 was determined by qRT-PCR after 4 days. (E): Cdx2 deletion partially rescued Cnot1, Cnot2, and Cnot3 silencing-induced differentiation. Oct4GiP (WT) or dKO23-5 (Cdx2-/- ) cells were transfected with Control-siRNA (Control), Cnot1-siRNA1 (Cnot1-KD), Cnot2-siRNA2 (Cnot2-KD), or Cnot3-siRNA2 (Cnot3-KD), and the expression of lineage markers was determined by qRT-PCR 96-hour after transfection. Abbreviations: ESC, embryonic stem cell; KD, Knockdown; WT, wild type.
Article Snippet: Human ESC Culture and
Techniques: Transfection, Western Blot, Cell Culture, Expressing, Microarray, Over Expression, Reporter Assay, Quantitative RT-PCR
Journal: Stem cells (Dayton, Ohio)
Article Title: Cnot1, Cnot2, and Cnot3 Maintain Mouse and Human ESC Identity and Inhibit Extraembryonic Differentiation
doi: 10.1002/stem.1070
Figure Lengend Snippet: Silencing Cnot1, Cnot2, or Cnot3 led to mouse embryonic stem cell (ESC) differentiation. (A): Silencing Cnot1, Cnot2, or Cnot3 resulted in ESC differentiation based on the Oct4GiP reporter assay. Oct4GiP ESCs were transfected with indicated siRNAs (two different siR NAs for each CCr4-Not complex gene) in M15 medium and cultured for 4 days. The percentage of differentiated cells (% differentiation) was determined by measuring the percentage of green fluorescent protein-negative cells by fluorescence-activated cell sorting (FACS) at the end of the culture. (B): Expression of siRNA-resistant Cnot2 or Cnot3 rescued the differentiation caused by Cnot2 or Cnot3 knockdown, respectively. Oct4GiP cells or Oct4GiP cells expressing siRNA-resistant Cnot2 (Cnot2-Rescue) or Cnot3 (Cnot3-Rescue) were transfected with Control, Cnot1-siRNA1, Cnot2-siRNA2, or Cnot3-siRNA2, and the percentage of differentiated cells was determined by the Oct4GiP reporter assays. Note that Cnot2-Rescue cells were not able to rescue the differentiation caused by Cnot1 or Cnot3 silencing, and Cnot3-Rescue cells were not able to rescue Cnot1 or Cnot2 silencing. ***, p < .001. (C): Silencing Cnot1, Cnot2, or Cnot3 resulted in morphological changes and loss of alkaline phosphatase (AP) staining in ESCs. Oct4GiP cells were transfected with the indicated siRNAs and cultured in the M15 medium. Cells were stained with the AP staining kit and imaged 4 days after transfection. (D): Cnot1, Cnot2, or Cnot3 silencing led to downregulation of ESC marker and upregulation of differentiation markers. Oct4GiP cells were transfected with the indicated siRNAs and cultured in the M15 medium. Cells were harvested for quantitative real-time PCR (qRT-PCR) analysis 4 days after transfection. ESC marker: Oct4; differentiation markers: Cdx2, Eomes, Gata3, Hand1, and Krt8. (E): Cnot1, Cnot2, or Cnot3 silencing reduced cell proliferation or viability in 2i medium. Oct4GiP cells were transfected with control-siRNA (Control), Cnot1-siRNA1 (Cnot1-KD), Cnot2-siRNA2 (Cnot2-KD), or Cnot3-siRNA2 (Cnot3-KD) and cul tured in 2i medium. Cell numbers were counted by FACS 4 days after transfection and normalized to control-transfected cells. (F): Cnot1, Cnot2, or Cnot3 silencing led to differentiation in 2i medium. Oct4GiP cells were transfected with indicated siRNAs and cultured in 2i medium. Cells were harvested for qRT-PCR analysis 4 days after transfection. (G): Expression of C-terminally HA-tagged Cnot2 (Cnot2-HA) in E14Tg2a cells. Expression of the exogenous Cnot2-HA was detected in Western blot with the HA-antibody, and Ran was used as a loading control. Expression of total (endogenous and exogenous) Cnot2 was determined by qPCR in wild-type E14Tg2a (E14) and Cnot2-HA expressing cells. The expression of the Cnot2-HA was estimated to be ∼2-fold of the endogenous Cnot2 on the mRNA level. (H): Identification of Cnot1 and Cnot3 in Cnot2-HA immunoprecipitation. HA-pull-down was carried out in E14Tg2a cells expressing Cnot2-HA. The presence of Cnot1, Cnot2-HA, and Cnot3 in the total lysate and pull-down sample (HA-beads) were detected by Western blot. Note that Oct4 was not detected in the pull down sample. As a negative control, protein-A beads were used in an independent pull-down. Abbreviations: HA, hemagglutinin; IP, immunoprecipitation; KD, knockdown.
Article Snippet: Human ESC Culture and
Techniques: Reporter Assay, Transfection, Cell Culture, Fluorescence, FACS, Expressing, Staining, Marker, Real-time Polymerase Chain Reaction, Quantitative RT-PCR, Western Blot, Immunoprecipitation, Negative Control
Journal: Stem cells (Dayton, Ohio)
Article Title: Cnot1, Cnot2, and Cnot3 Maintain Mouse and Human ESC Identity and Inhibit Extraembryonic Differentiation
doi: 10.1002/stem.1070
Figure Lengend Snippet: Cnot1, Cnot2, and Cnot3 are required for human embryonic stem cell (ESC) self-renewal. (A): Cnot1, Cnot2, and Cnot3 were down-regulated during human ESC differentiation. H1 human ESCs were differentiated for 7 days using 100 ng/ml human recombinant BMP4. The expression levels of Cnot1, Cnot2, and Cnot3 as well as Oct4 and differentiation markers Cdx2 and Hand1 were determined by quantitative realtime PCR (qRT-PCR). (B): Silencing of Cnot1, Cnot2, or Cnot3 led to morphological changes of human ESCs. H1 cells were imaged 6 days after transfection. Phase-contrast images highlight the undifferentiated morphology of human ESCs in the lipids-only transfected cells (mock) versus the differentiated phenotype in the Cnot1, Cnot2, or Cnot3 siRNA transfected cells. (C): Silencing of the Cnot genes led to upregulation of the Cdx2 and Gata3 proteins. H1 cells were transfected with lipids-only (mock), Oct4, Cnot2, or Cnot3 siRNAs. Cells were fixed and stained for Cdx2 or Gata3 expression by immunofluorescence staining 6 days after transfection. (D): Silencing of the Cnot genes led to downregulation of the ESC marker and upregulation of the extraembryonic markers. H1 cells were harvested 6 days after transfection and marker expression was determined by qRT-PCR. Abbreviations: BMP, bone morphogenetic protein; DAPI, 4′-6-diamidino-2-phenylindole.
Article Snippet: Human ESC Culture and
Techniques: Recombinant, Expressing, Quantitative RT-PCR, Transfection, Staining, Immunofluorescence, Marker
Journal: Nature chemical biology
Article Title: An iron-dependent and transferrin-mediated cellular uptake pathway for plutonium
doi: 10.1038/nchembio.594
Figure Lengend Snippet: Contour plots of Pu Lα X-ray fluorescence intensity measured by SXFM superimposed on optical images of cells. (a) Pu-free control cell; (b) uptake of Pu as PuCFeNTf; (c) very low uptake of mixed FeCPuNTf and of (d) chloroquine-treated cells exposed to PuCFeNTf. The Pu observed on the left edge of panel d is associated with cellular debris. The average background corrected Pu content (e) of the Pu-containing cells exposed to closed PuCFeNTf (labeled “PuCFeNTf”, n = 8) is greater than that of control cells (labeled “Control”, n = 20), cells simultaneously treated with 50 μM chloroquine and PuCFeNTf (labeled “Chloroquine”, n = 8), cells exposed to FeCPuNTf (labeled “FeCPuNTf”, n = 21), or cells exposed to an equimolar mixture of Fe2Tf and PuCFeNTf (labeled “Fe2Tf”, n = 4). The error bars are ±S.E.M. at 95% confidence.
Article Snippet: Cell Uptake and
Techniques: Fluorescence, Control, Labeling
Journal: Frontiers in Bioengineering and Biotechnology
Article Title: Self-assembled peptide-paclitaxel nanoparticles for enhancing therapeutic efficacy in colorectal cancer
doi: 10.3389/fbioe.2022.938662
Figure Lengend Snippet: Characterizations of LPK-PTX NPs. (A) LPK-PTX NPs morphology were imaged via TEM. Black particles were Rev-PTX NPs or LPK-PTX NPs. (B) DLS studies showed particle size distribution of Rev-PTX NPs and LPK-PTX NPs ( n = 3). (C) Size distribution of LPK-PTX NPs showing their stability in PBS, Culture medium and Culture medium (Containing FBS). The PTX release rate of LPK-PTX NPs in PBS, Culture medium (D) and HCT116 cells (E) were detected at different time points (0, 2, 4, 6, 12, 24, and 48 h).
Article Snippet: The
Techniques:
Journal: Frontiers in Bioengineering and Biotechnology
Article Title: Self-assembled peptide-paclitaxel nanoparticles for enhancing therapeutic efficacy in colorectal cancer
doi: 10.3389/fbioe.2022.938662
Figure Lengend Snippet: Cellular uptake of Cy5.5-LPK-PTX NPs in vitro . (A) Confocal laser scanning microscopy (CLSM) images of HCT116 cells incubated with 20 μg/ml Cy5.5-Rev-PTX NPs or Cy5.5-LPK-PTX NPs for 0.5, 1, 2, and 4 h, respectively. The fluorescence intensity of Cy5.5-LPK-PTX NPs was much stronger than Cy5.5-Rev-PTX NPs at various times. (B, C) Cellular uptake of Cy5.5-Rev-PTX NPs or Cy5.5-LPK-PTX NPs in HCT116 cells after incubation for 1, 2 or 4 h were detected by flow cytometry. And the fluorescence intensity in HCT116 cells was calculated (n = 3) (* p < 0.05, **** p < 0.0001). (D, E) Subcellular localization of LPK-PTX NPs. HCT116 cells were incubated with Cy5.5-LPK-PTX NPs for 4 h and treated with Hoechst for nuclear staining or Lysotracker for tracking lysomes. Then cells were observed by confocal microscopy. The overlay results indicated that LPK-PTX NPs was localized in the lysosome. Bar, 25 μM.
Article Snippet: The
Techniques: In Vitro, Confocal Laser Scanning Microscopy, Incubation, Fluorescence, Flow Cytometry, Staining, Confocal Microscopy
Journal: Frontiers in Bioengineering and Biotechnology
Article Title: Self-assembled peptide-paclitaxel nanoparticles for enhancing therapeutic efficacy in colorectal cancer
doi: 10.3389/fbioe.2022.938662
Figure Lengend Snippet: In vitro cytotoxicity of LPK-PTX NPs. (A) Cell viability of LPK-PTX NPs (PTX, Rev-PTX NPs as control groups) on normal cells NCM460 and colorectal cancer cells HCT116 and RKO after treated with various concentrations for 48 h. The concentration range of each compound was from 0.3125 μg/ml to 20 μg/ml. The data were presented as the means ± standard deviation. n = 5. * p < 0.05, ** p < 0.01, *** p < 0.001, **** p < 0.0001. (B) Cellular apoptosis of HCT116 cells treated with PTX, Rev-PTX NPs and LPK-PTX NPs were investigated by flow cytometry. A representative results of early apoptosis (Q3: PI -, Annexin V+) and late apoptosis (Q2: PI +, Annexin V +) induced by PTX, Rev-PTX NPs, and LPK-PTX NPs were 44.8% (20.2% + 24.6%), 43.3% (20.6% + 22.7%), and 49.1% (24.8% + 24.3%), respectively. (C) The percentage early and late apoptosis was analyzed. ( n = 3, ** p < 0.01).
Article Snippet: The
Techniques: In Vitro, Concentration Assay, Standard Deviation, Flow Cytometry
Journal: Frontiers in Bioengineering and Biotechnology
Article Title: Self-assembled peptide-paclitaxel nanoparticles for enhancing therapeutic efficacy in colorectal cancer
doi: 10.3389/fbioe.2022.938662
Figure Lengend Snippet: In vivo targeted tumor imaging of Cy5.5-LPK-PTX NPs. (A) The whole animal imaging of HCT116 tumor-bearing mice at 1, 2, 4, 6, 12, and 24 h after intravenously injection of 200 μl Cy5.5-Rev-PTX NPs or Cy5.5-LPK-PTX NPs (20 μg/ml). The circles indicate the locations of tumors in mice. (B) The fluorescence intensities of tumor tissues were quantified. **** p < 0.0001. (C) Ex vivo imaging of the tumors and other major organs (Heart, Liver, Spleen, Lung, Kidneys) from mice treated intravenously with Cy5.5-Rev-PTX NPs or Cy5.5-LPK-PTX NPs at 24 h. (D) The fluorescence intensities at the tumor sites and major organs were quantified. (E) The blood fluorescence intensity was detected at several time points post-administration.
Article Snippet: The
Techniques: In Vivo, Imaging, Injection, Fluorescence, Ex Vivo
Journal: International Journal of Molecular Sciences
Article Title: A Genetically Encoded Dark-to-Bright Biosensor for Visualisation of Granzyme-Mediated Cytotoxicity
doi: 10.3390/ijms241713589
Figure Lengend Snippet: Activation of CRSTAL by ectopic GZMB expression. ( a ) Structure of the constructs of full-length GZMB containing the inactivation peptide GE as well as the mutated version lacking GE (GZMBΔGE); SP signal peptide. ( b ) CRSTAL-293T cells were transfected with pGZMB, pGZMBΔGE or a mock plasmid. CRSTAL fluorescence images and transmitted light (TL) images were acquired and analysed using the ImageXpress ® Pico instrument and Cell Reporter express software 2.9.
Article Snippet:
Techniques: Activation Assay, Expressing, Construct, Transfection, Plasmid Preparation, Fluorescence, Software
Journal: International Journal of Molecular Sciences
Article Title: A Genetically Encoded Dark-to-Bright Biosensor for Visualisation of Granzyme-Mediated Cytotoxicity
doi: 10.3390/ijms241713589
Figure Lengend Snippet: General functionality test of CRSTAL. CRSTAL-293T-iGZMBΔGE were seeded and treated with doxycycline for 48 h. The cells were either ( a ) analysed via fluorescence microscopy or ( b ) lysed and analysed via Western blot.
Article Snippet:
Techniques: Fluorescence, Microscopy, Western Blot
Journal: International Journal of Molecular Sciences
Article Title: A Genetically Encoded Dark-to-Bright Biosensor for Visualisation of Granzyme-Mediated Cytotoxicity
doi: 10.3390/ijms241713589
Figure Lengend Snippet: Time course of CRSTAL fluorescence. ( a ) CRSTAL-293T-iGZMBΔGE cells were seeded and induced with 100 ng/mL doxycycline every 12 h for the last time points, then every 2 h for the time points 0–36 h. Fluorescence was measured by flow cytometry. ( b ) CRSTAL-293T-iGZMBΔGE cells were induced with 100 ng/mL doxycycline in steps of 2 h over 24 h. Cells were lysed at 24 h and analysed via Western blot.
Article Snippet:
Techniques: Fluorescence, Flow Cytometry, Western Blot
Journal: International Journal of Molecular Sciences
Article Title: A Genetically Encoded Dark-to-Bright Biosensor for Visualisation of Granzyme-Mediated Cytotoxicity
doi: 10.3390/ijms241713589
Figure Lengend Snippet: Caspase-8-independent activation of CRSTAL. ( a ) Design of the inducible, self-cleaving variant of caspase-8 (iCasp8FT) based on the sequence of pro-caspase-8. ( b , c ) Expression of active caspase-8 or GZMB was induced in CRSTAL-293T-iCasp8FT or CRSTAL-293T-iGZMBΔGE via treatment with 1 µg/mL doxycycline in presence or absence of 100 µM Z-VAD-fmk. Cells were analysed 48 h post induction ( b ) via flow cytometry or ( c ) via Western blot. Statistics: Student’s t -test; **: p < 0.01; ***: p < 0.005; ****: p < 0.001; n.s.: not significant. Detailed flow cytometry information is depicted in .
Article Snippet:
Techniques: Activation Assay, Variant Assay, Sequencing, Expressing, Flow Cytometry, Western Blot
Journal: International Journal of Molecular Sciences
Article Title: A Genetically Encoded Dark-to-Bright Biosensor for Visualisation of Granzyme-Mediated Cytotoxicity
doi: 10.3390/ijms241713589
Figure Lengend Snippet: CAR-T cell killing assay on CRSTAL-expressing target cells. CRSTAL-293T-CD19 cells were seeded and co-incubated with CD19FBBz-CTL or CAR-negative CTL at effector-to-target ratios of ( a , b ) 5:1 or © 3:1 for 48 h. Cells were stained and analysed ( a ) via flow cytometry, ( b ) analysed via ImageXpress ® Pico, or ( c ) via confocal laser scanning microscopy. Statistics: Student’s t -test; *: p <0.05; **: p < 0.01. Detailed flow cytometry information is depicted in .
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Techniques: Expressing, Incubation, Staining, Flow Cytometry, Confocal Laser Scanning Microscopy
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: PD-L1 expression is upregulated in both sepsis and THP-1-derived macrophages upon LPS + INF-γ stimulation. A PD-L1 expression in septic patients was analyzed using datasets GES134347 and GSE65682 retrieved from the GEO database. Statistical significance was determined by the Wilcoxon test. * p < 0.05. B THP-1-derived macrophages (THP-1-M) were co-stimulated with LPS (100 ng/ml) and IFN-γ (20 ng/ml) for 12–24 h, followed by quantification of PD-L1 mRNA levels via qRT-PCR ( n = 3 independent biological replicates). C PD-L1 protein expression in THP-1-M after LPS + IFN-γ stimulation for 6, 12, or 24 h was assessed by Western blotting. D Flow cytometry analysis of PD-L1 protein expression in THP-1-M treated with LPS + IFN-γ for 24 h. E Subcellular localization of PD-L1 in THP-1-M following 12 h LPS + IFN-γ stimulation was visualized by confocal laser scanning microscopy. The relative fluorescence intensity and Pearson’s R value were analyzed by ImageJ ( n = 3 independent biological replicates). The data are presented as the mean ± SEM. Statistical analysis for B was performed by one-way ANOVA, and that for E was determined by Student’s t-test. * p < 0.05
Article Snippet: The human
Techniques: Expressing, Derivative Assay, Quantitative RT-PCR, Western Blot, Flow Cytometry, Confocal Laser Scanning Microscopy, Fluorescence
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: PD-L1 expression positively correlates with proinflammatory markers in M1-polarized macrophages. (A-C) PD-L1-overexpressing (PD-L1 HI ) and control (PD-L1 NC ) THP-1-M cells were stimulated with LPS (100 ng/ml) + IFN-γ (20 ng/ml) for 12 h followed by RNA sequencing. A Heatmap of inflammatory gene expression in PD-L1 HI vs. PD-L1 NC cells. B MA plot showing differential gene expression between PD-L1 HI and PD-L1 NC cells. C TPM expression values of IL-6, IL-27 and NOS2. D - E PD-L1 HI and PD-L1 NC cells were stimulated with LPS + IFN-γ for 24 h. ( n = 3 independent biological replicates) ( D ) qRT-PCR analysis of IL-6, IL-27 and NOS2 mRNA levels ( n = 3 independent biological replicates). E ELISA for IL-6/IL-27 and Griess reagent assay for NO in supernatants ( n = 3 independent biological replicates). (F-G) PD-L1-knockout THP-1-M (PD-L1 KO /THP-1-M) and PD-L1 NC /THP-1-M were stimulated with LPS + IFN-γ for 24 h. F qRT-PCR analysis of IL-6, IL-27 and NOS2 mRNA levels ( n = 3 independent biological replicates). G ELISA and Griess reagent detection of IL-6/IL-27 proteins and NO in supernatants ( n = 3 independent biological replicates). The data are presented as the mean ± SEM. Statistical analysis for C, D, E, F and G was performed by Student’s t-test. * p < 0.05
Article Snippet: The human
Techniques: Expressing, Control, RNA Sequencing, Gene Expression, Quantitative RT-PCR, Enzyme-linked Immunosorbent Assay, Knock-Out
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: Bioinformatics analysis integrating RNA sequencing data and GEO datasets demonstrated PD-L1-mediated significant activation of the NOD-like receptor signaling pathway. A PD-L1 NC /THP-1-M cells were co-stimulated with LPS (100 ng/ml) + IFN-γ (20 ng/ml) for 12 h followed by RNA sequencing, with subsequent KEGG pathway analysis of activated signaling pathways. B - C PD-L1-centered single-gene GSEA across datasets GSE57065 , GSE28750 and GSE95233 . B Ridge plot displaying top 20 activated pathways. C GSEA enrichment plot illustrating NOD-like receptor signaling pathway activation. D Comparative PD-L1-specific GSEA of NOD-like receptor signaling pathway activation in PD-L1 HI /THP-1-M vs. PD-L1 NC /THP-1-M cells following 12 h LPS + IFN-γ co-stimulation with RNA sequencing verification
Article Snippet: The human
Techniques: RNA Sequencing, Activation Assay, Protein-Protein interactions
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: Multi-omics integration identified AIM2 as the critical mediator for PD-L1-regulated macrophage M1 polarization. A - D PD-L1 NC /THP-1-M cells were co-stimulated with LPS (100 ng/ml) + IFN-γ (20 ng/ml) for 12 h for PD-L1-targeted IP-MS analysis. A Global proteomic landscape showing peptide/protein distribution and Venn intersections between PBS control vs. LPS + IFN-γ groups. B Triple-dataset intersection analysis integrating IP-MS, RNA-seq and GEO datasets ( GSE57065 , GSE28750 , GSE95233 ) for core candidate screening. C GO enrichment of 208 unique interacting proteins in LPS + IFN-γ group with inflammatory pathway emphasis. D Representative tandem MS/MS spectra identifying AIM2. E Co-IP validation of PD-L1-AIM2 interaction post 12 h LPS + IFN-γ co-stimulation in PD-L1 NC /THP-1-M cells ( F ) Differential AIM2 expression in PD-L1 HI /THP-1-M vs. PD-L1 NC /THP-1-M cells by MA plot (left) and TPM expression profile (right) following 12 h LPS + IFN-γ stimulation ( n = 3 independent biological replicates). G Temporal AIM2 regulation: qRT-PCR analysis at 6/12/24 h (left, n = 3 independent biological replicates) with Western blot confirmation at 24 h (right). H - J PD-L1-AIM2 structural docking studies. H AlphaFold-predicted full-length molecular models of PD-L1 and AIM2. I Top 5 scoring complexes from GRAMM docking server simulations. J High-resolution interface visualization of optimal complex with potential interaction sites. The data are presented as the mean ± SEM. Statistical analysis for F was performed by Student’s t-test, and that for G was determined by one-way ANOVA. * p < 0.05
Article Snippet: The human
Techniques: Biomarker Discovery, Protein-Protein interactions, Control, RNA Sequencing, Tandem Mass Spectroscopy, Co-Immunoprecipitation Assay, Expressing, Quantitative RT-PCR, Western Blot
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: PD-L1 overexpression potentiates AIM2-mediated downstream effector (IL-18/IFN-γ) production and amplifies STAT1 activation cascade. A PD-L1 HI /THP-1-M vs. PD-L1 NC /THP-1-M cells were co-stimulated with LPS (100 ng/ml) + IFN-γ (20 ng/ml) for 12 h. RNA-seq-derived TPM profiles of IL-1β (left) and IL-18 (middle), with MA plot visualization of IL-18 differential expression (right) ( n = 3 independent biological replicates). B Dual-modality verification of IL-18 regulation: qRT-PCR analysis (left) with paired ELISA quantification (right) post 12 h co-stimulation ( n = 3 independent biological replicates). C Temporal dynamics of IFN-γ regulation: mRNA/protein measurement by qRT-PCR (left) and ELISA (right) at 24 h endpoint ( n = 3 independent biological replicates). D Western blot detection of STAT1 phosphorylation status and basal expression following 24 h LPS + IFN-γ co-stimulation. E - G PD-L1-specific single-gene GSEA analysis across GEO datasets ( GSE57065 , GSE28750 , and GSE95233 ). E Identification of 111 molecules positively correlated with PD-L1 expression. F MCODE algorithm-based core module identification in Cytoscape (40 hub molecules). G GO enrichment analysis of the 40-molecule module revealing JAK-STAT pathway activation. The data are presented as the mean ± SEM. Statistical analysis for A, B and C was performed by Student’s t-test. * p < 0.05
Article Snippet: The human
Techniques: Over Expression, Activation Assay, RNA Sequencing, Derivative Assay, Quantitative Proteomics, Quantitative RT-PCR, Enzyme-linked Immunosorbent Assay, Western Blot, Phospho-proteomics, Expressing
Journal: Cell Communication and Signaling : CCS
Article Title: PD-L1 mediates M1 polarization of macrophages via the AIM2/IL-18/STAT1 signaling axis during sepsis
doi: 10.1186/s12964-025-02578-1
Figure Lengend Snippet: Triple-verification strategy (gene silencing/antibody neutralization/site-directed mutagenesis) confirms regulatory hierarchy of PD-L1/AIM2/IL-18/STAT1 signaling axis in macrophage M1 polarization. A PD-L1 HI /THP-1-M and PD-L1 NC /THP-1-M cells were pretreated with AIM2-targeting siRNA or scramble siRNA (scr siRNA) prior to 24 h LPS (100 ng/ml) + IFN-γ (20 ng/ml) co-stimulation, with subsequent Western blotting analysis of STAT1 phosphorylation. B - C Anti-IL-18 neutralizing antibody (1 µg/ml) and isotype control (1 µg/ml) were pretreated for 24 h followed by LPS + IFN-γ 24 h co-stimulation. B qRT-PCR quantification of IFN-γ mRNA ( n = 3 independent biological replicates). C STAT1 phosphorylation profiling by Western blotting. D Truncation mutant validation: LPS + IFN-γ-stimulated (24 h) PD-L1 Δ35–90 cells analyzed for STAT1 activation vs. full length type. E Following AIM2 silencing in PD-L1 HI /THP-1-M and PD-L1 NC /THP-1-M cells, qRT-PCR quantification of IL-6, IL-27 and NOS2 mRNA after 24 h LPS + IFN-γ stimulation ( n = 3 independent biological replicates). F Post IL-18 neutralization, mRNA levels of IL-6, IL-27 and NOS2 were assessed by qRT-PCR under LPS + IFN-γ 24 h stimulation ( n = 3 independent biological replicates). G STAT1-silenced cells were analyzed for IL-6/IL-27/NOS2 transcriptional changes post 24 h LPS + IFN-γ exposure ( n = 3 independent biological replicates). H Truncated PD-L1 Δ35–90 mutants were evaluated for IL-6, IL-27 and NOS2 mRNA expression following LPS + IFN-γ 24 h challenge ( n = 3 independent biological replicates). The data are presented as the mean ± SEM. Statistical analysis for B, E, F, G and H was performed by Student’s t-test. * p < 0.05
Article Snippet: The human
Techniques: Neutralization, Mutagenesis, Western Blot, Phospho-proteomics, Control, Quantitative RT-PCR, Biomarker Discovery, Activation Assay, Expressing
Journal: Journal of Cellular and Molecular Medicine
Article Title: Wogonin attenuates the pathogenicity of Streptococcus pneumoniae by double‐target inhibition of Pneumolysin and Sortase A
doi: 10.1111/jcmm.17684
Figure Lengend Snippet: Toxic side effects of wogonin on host cells. A549 (A) and J774 cells (B) were cocultured with different concentrations of wogonin, and LDH release into the supernatant was quantified. Each column represents replicates ( n = 3), and error bars represent standard errors.
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Techniques:
Journal: Journal of Cellular and Molecular Medicine
Article Title: Wogonin attenuates the pathogenicity of Streptococcus pneumoniae by double‐target inhibition of Pneumolysin and Sortase A
doi: 10.1111/jcmm.17684
Figure Lengend Snippet: Wogonin inhibits S. pneumoniae adhesion and colonization and neutralizes PLY‐mediated injury in A549 cells. (A,B) Wogonin (0, 16, 32, 64 or 128 μg/mL) was added to the S. pneumoniae D39 culture system, and the numbers of S. pneumoniae D39 and S. pneumoniae E1 strains adhering to A549 cells were measured at 3 and 6 h. (C) PLY‐treated A549 cells. Green and red fluorescence read‐outs were imaged using a confocal laser scanning microscope. (D–G) Wogonin was added at concentrations of 8, 16, 32 and 64 μg/mL and incubated with PLY‐treated A549 cells. (H) LDH release by A549 cells in the presence of various concentrations of wogonin. Each column represents replicates ( n = 3), and error bars represent standard errors. *Represents p < 0.05 and **indicates p < 0.01.
Article Snippet:
Techniques: Fluorescence, Laser-Scanning Microscopy, Incubation